eQTL

eQTL is a cis/trans plot for GWAS

Upload files to use eQTL Map

For using eQTL Map, you need to upload SNP_position file, phenotype_position file and p-value file.

NICER MARSweb

Data description

--------- SNP Position file ---------
There is three fileds per variants (no headline)
rs_id chr_number poistion
ex) 5 variants
rs1 chr1 1
rs2 chr3 2
rs13 chr12 3
rs16 chr13 4
rs22 chr15 5
** Position refers to the order in the given data, not the actual position number. **
--------- gene Position Data ---------
There is three fileds per gene (no headline)
gene_id chr_number poistion
ex) 3 gene
gene1 chr1 1
gene2 chr5 2
gene10 chr10 3
** Position refers to the order in the given data, not the actual position number. **
--------- P-value file ---------
** Please upload the results obtained from running NICE **

--------- MARSweb result ---------
There is three fileds per set
setname LRT_pvalue UNI_pvalue
ex) 3 set result
setname LRT_pvalue UNI_pvalue
set1    0.01  0.1
set2    0.05  0.2
set3    0.2   0.9